Open Snake Tracing System

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Open Snake Tracing System (page being constructed)
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Tracing System (under construction)
  
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[[Image:OpenSnake.jpg|thumb|center|600px| Figure 1: Tracing result on Neuromuscular Projection Fibers from DIADEM competition [http://www.hhmi.org/news/20100902.html][http://diademchallenge.org/] ]]
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The code for the basic 3-D open-curve tracing system is now in the SVN. The latest code containing the 4-D open-curve tracing model, microglia processing code, GPU implementations and segmentation code will be released soon. We are working on the user manual for the software system.
  
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[[Image:OpenSnake1.png|thumb|center|400px| Figure 2: Tracing result on Olfactory Projection Fibers from DIADEM competition ]]
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[[Image:Screenshot2.jpg|thumb|center|1100px| Figure 1: ScreenShot of the Tracing System. 87 microglia cells were traced automatically and their identities are color-coded in the rendering. The feature table shows a set of features for each cell. ]]
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[[Image:Screenshot1.jpg|thumb|center|1100px| Figure 2: ScreenShot of the Tracing System. Close-up view of one microglia cell, the soma/nuclei is segmented automatically.]]
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[[Image:Screenshot.jpg|thumb|center|1100px| Figure 3: ScreenShot of the Tracing System. Tracing result was produced with 4-D open-curve snake model, which traces the centerline and estimates the radius simultaneously. ]]
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[[Image:Results.jpg|thumb|center|1100px| Figure 4: Tracing and Reconstruction Results of Our System on Different Datasets]]
  
  
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[[Image:OpenSnake2.jpg|thumb|center|400px| Figure 3: Tracing result on Cerebellar Climbing Fibers from DIADEM competition ]]
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*Contributors to the Tracing System:  
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*Contributors to the New Worm System:  
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**Yu Wang [http://www.rpi.edu/~wangy15]
 
**Yu Wang [http://www.rpi.edu/~wangy15]
 
**Arunachalam Narayanaswamy
 
**Arunachalam Narayanaswamy
 
**Charlene Tsai
 
**Charlene Tsai

Latest revision as of 16:46, 10 May 2011

Tracing System (under construction)

The code for the basic 3-D open-curve tracing system is now in the SVN. The latest code containing the 4-D open-curve tracing model, microglia processing code, GPU implementations and segmentation code will be released soon. We are working on the user manual for the software system.

Figure 1: ScreenShot of the Tracing System. 87 microglia cells were traced automatically and their identities are color-coded in the rendering. The feature table shows a set of features for each cell.
Figure 2: ScreenShot of the Tracing System. Close-up view of one microglia cell, the soma/nuclei is segmented automatically.
Figure 3: ScreenShot of the Tracing System. Tracing result was produced with 4-D open-curve snake model, which traces the centerline and estimates the radius simultaneously.
Figure 4: Tracing and Reconstruction Results of Our System on Different Datasets


  • Contributors to the Tracing System:
    • Yu Wang [1]
    • Arunachalam Narayanaswamy
    • Charlene Tsai
Retrieved from "http://farsight-toolkit.ee.uh.edu/wiki/Open_Snake_Tracing_System"
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