Open Snake Tracing System

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Tracing System (under construction)
 
Tracing System (under construction)
  
'''The source code for the open snake tracing system now is available is the SVN.  
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The code for the basic 3-D open-curve tracing system is now in the SVN. The latest code containing the 4-D open-curve tracing model, microglia processing code, GPU implementations and segmentation code will be released soon. We are working on the user manual for the software system.
All the source code for the latest software system, parallel implementation, matlab prototypes of our recent work for the CVPR2011 will be released soon.
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'''
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[[Image:OpenSnakeTracing.png|thumb|center|1100px| Figure 1: Tracing and Reconstruction Results of Our System on Different Datasets]]
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[[Image:Screenshot2.jpg|thumb|center|1100px| Figure 1: ScreenShot of the Tracing System. 87 microglia cells were traced automatically and their identities are color-coded in the rendering. The feature table shows a set of features for each cell. ]]
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[[Image:Screenshot1.jpg|thumb|center|1100px| Figure 2: ScreenShot of the Tracing System. Close-up view of one microglia cell, the soma/nuclei is segmented automatically.]]
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[[Image:Screenshot.jpg|thumb|center|1100px| Figure 3: ScreenShot of the Tracing System. Tracing result was produced with 4-D open-curve snake model, which traces the centerline and estimates the radius simultaneously. ]]
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[[Image:Results.jpg|thumb|center|1100px| Figure 4: Tracing and Reconstruction Results of Our System on Different Datasets]]
  
  

Latest revision as of 16:46, 10 May 2011

Tracing System (under construction)

The code for the basic 3-D open-curve tracing system is now in the SVN. The latest code containing the 4-D open-curve tracing model, microglia processing code, GPU implementations and segmentation code will be released soon. We are working on the user manual for the software system.


Figure 1: ScreenShot of the Tracing System. 87 microglia cells were traced automatically and their identities are color-coded in the rendering. The feature table shows a set of features for each cell.
Figure 2: ScreenShot of the Tracing System. Close-up view of one microglia cell, the soma/nuclei is segmented automatically.
Figure 3: ScreenShot of the Tracing System. Tracing result was produced with 4-D open-curve snake model, which traces the centerline and estimates the radius simultaneously.
Figure 4: Tracing and Reconstruction Results of Our System on Different Datasets


  • Contributors to the Tracing System:
    • Yu Wang [1]
    • Arunachalam Narayanaswamy
    • Charlene Tsai
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