Revision as of 16:40, 30 August 2011 (view source) Bbusse (Talk | contribs) (Created to document project progress as-it-happens and encourage people to actually touch the wiki)		Revision as of 20:06, 30 August 2011 (view source) Luisij (Talk | contribs) (→August 2011) Newer edit →
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−	==August 2011==	+	=August 2011=
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		+	== Image Preprocessing Improvements ==
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		+	*Background subtraction used to remove the blur and imaging artifacts
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		+	== Tiling Functions for Microglia Tracing and Nuclei Segmentation: ==
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		+	*Montage can be split into smaller tiles for processing.
		+	*Workflow of individual tiles can be distributed.
		+	**Tracing Tiles of Microglia
		+	**Segment and Classify Nuclei
		+	*Resulting Files can be stitched back into Global Coordinates
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		+	== Soma Detection and Segmentation Improvements ==
		+
		+	*Old method of morphological functions on the GFP channel missed somas.
		+	*Correlate Nuclei Channel to Microglia channel to identify somas

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Revision as of 20:06, 30 August 2011

Contents 1 August 2011 1.1 Image Preprocessing Improvements 1.2 Tiling Functions for Microglia Tracing and Nuclei Segmentation: 1.3 Soma Detection and Segmentation Improvements

August 2011

Image Preprocessing Improvements

• Background subtraction used to remove the blur and imaging artifacts

Tiling Functions for Microglia Tracing and Nuclei Segmentation:

• Montage can be split into smaller tiles for processing.
• Workflow of individual tiles can be distributed.
  • Tracing Tiles of Microglia
  • Segment and Classify Nuclei
• Resulting Files can be stitched back into Global Coordinates

Soma Detection and Segmentation Improvements

• Old method of morphological functions on the GFP channel missed somas.
• Correlate Nuclei Channel to Microglia channel to identify somas