TissueNets HowToBuild
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| − | ! Module Name !! What it does !! Contributors !! | + | ! Module Name !! What it does !! Contributors !! Location!!What to Build |
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| TissueNets | | TissueNets | ||
| − | | Displays biological networks | + | | Displays biological networks, Creates Cluto files |
| − | + | | tissuenets//tissuenets | |
| − | | | + | | (tissuenets.cpp) |
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| [http://farsight-toolkit.org/mw/scripts/download.php?downloadType=Modules&operatingSystem=win32&downloadFile=register_pair.exe&submit=Download win32] [http://farsight-toolkit.org/mw/scripts/download.php?downloadType=Modules&operatingSystem=win64&downloadFile=register_pair.exe&submit=Download win64] | | [http://farsight-toolkit.org/mw/scripts/download.php?downloadType=Modules&operatingSystem=win32&downloadFile=register_pair.exe&submit=Download win32] [http://farsight-toolkit.org/mw/scripts/download.php?downloadType=Modules&operatingSystem=win64&downloadFile=register_pair.exe&submit=Download win64] | ||
|[http://www.apache.org/licenses/LICENSE-2.0 Apache License, Version 2.0] | |[http://www.apache.org/licenses/LICENSE-2.0 Apache License, Version 2.0] | ||
Revision as of 16:02, 25 August 2009
In order to use the TissueNets program with its python GUI, we need to
| Module Name | What it does | Contributors | Location | What to Build | |
|---|---|---|---|---|---|
| TissueNets | Displays biological networks, Creates Cluto files | tissuenets//tissuenets | (tissuenets.cpp) | win32 win64 | Apache License, Version 2.0 |
| register_joint | 3D joint Multi-image Registration | Charlene Tsai | Y | Y | N |
4- Build BioNet (requires libxml2\include)
5- In order to run the XQUERY programs: • Install Java • Download and install Saxon-B 9.1 from: http://saxon.sourceforge.net/ Click on “Download for Java(2.0 Mbytes)
Note that I included the required Jar files (saxon9 and others) in bionet directory. They should be sufficient to run XQUERY programs.
DO NOT install Saxon-SA 9.1 instead. It is NOT OPEN-SOURCE
6- Set the CLASSPATH accordingly so that the required jar files can be found. (If the Jar files are in bionet directory, including bionet in the CLASSPATH will do the job
7- Install Python 2.6
TO RUN BioNet
1- Change directory to bionet 2- Type : python bionet.py
