Farsight Courses OneWeek
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Revision as of 13:52, 18 September 2009
Contents |
Audience
- Researchers in academic & industrial laboratories who make active use of optical microscopes, and desire to make image-based quantitative measurements for hypothesis testing, screening, and modeling
- Particular emphasis is placed on fluorescence based multi-dimensional microscopy (3-D confocal/multi-photon, time-lapse, multi-channel, etc.)
- This course will provide instruction on biological image analysis concepts/theory, and hands-on practical learning.
Learning Objectives
- At the end of this course, the participants will develop a working knowledge of how to apply freely available open-source computational image analysis tools (FARSIGHT, ITK, VTK, Paraview, Overview) to generate quantitative measurements from 3D/4D/5D microscopy image data.
Pre-requisites
- Familiarity with contemporary computers PC/Mac/Linux
- Basic knowledge of programming using scripting languages
- We will use Python
- Familiarity with common viewing tools and file formats
