Tracking

Contents 1 5-D Image Analysis 2 Overview 3 Tracking Program 4 Tracking Editor

5-D Image Analysis

Overview

5-D Image analysis involves object extraction and tracking of multiple channel data.

Tracking Program

Usage:

  Track

Input parameters are contained in the file filename.conf located in the same directory of execution. It contains one row per 3-D image to be processed of the form

 DatasetID     "Filename"    channel_id     time_point

An example line would be

dataset1 "data/wF5p120307m1s5-t10/wF5p120307m1s5_w1_t10.tif" 1 10
dataset1 "data/wF5p120307m1s5-t10/wF5p120307m1s5_w2_t10.tif" 2 10
dataset1 "data/wF5p120307m1s5-t10/wF5p120307m1s5_w3_t10.tif" 3 10
dataset1 "data/wF5p120307m1s5-t10/wF5p120307m1s5_w4_t10.tif" 4 10
dataset1 "data/wF5p120307m1s5-t10/wF5p120307m1s5_w1_t11.tif" 1 11
dataset1 "data/wF5p120307m1s5-t10/wF5p120307m1s5_w2_t11.tif" 2 11
dataset1 "data/wF5p120307m1s5-t10/wF5p120307m1s5_w3_t11.tif" 3 11
...
dataset1 "data/wF5p120307m1s5-t10/wF5p120307m1s5_w4_t14.tif" 4 14

First line represents one 3-D of a movie named "dataset1" with filename "data/wF5p120307m1s5-t10/wF5p120307m1s5_w1_t10.tif". This file is from channel 1 and time point 10.

Tracking Editor