TissueNets HowToBuild
From FarsightWiki
In order to use the TissueNets program with its python GUI, we need to
| Module Name | What it does | Contributors | Location | What to Build | |
|---|---|---|---|---|---|
| TissueNets | Displays biological networks, Creates Cluto files | tissuenets//tissuenets | (tissuenets.cpp) | win32 win64 | Apache License, Version 2.0 |
| register_joint | 3D joint Multi-image Registration | Charlene Tsai | Y | Y | N |
4- Build BioNet (requires libxml2\include)
5- In order to run the XQUERY programs: • Install Java • Download and install Saxon-B 9.1 from: http://saxon.sourceforge.net/ Click on “Download for Java(2.0 Mbytes)
Note that I included the required Jar files (saxon9 and others) in bionet directory. They should be sufficient to run XQUERY programs.
DO NOT install Saxon-SA 9.1 instead. It is NOT OPEN-SOURCE
6- Set the CLASSPATH accordingly so that the required jar files can be found. (If the Jar files are in bionet directory, including bionet in the CLASSPATH will do the job
7- Install Python 2.6
TO RUN BioNet
1- Change directory to bionet 2- Type : python bionet.py
