The Worm Project

Revision as of 14:12, 10 April 2009 (view source) Kuttek (Talk | contribs) (→Tracking) ← Older edit		Revision as of 14:15, 10 April 2009 (view source) Kuttek (Talk | contribs) (→Detection) Newer edit →
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	See [[Features|FARSIGHT Features]]		See [[Features|FARSIGHT Features]]
	===Detection===		===Detection===
		+	Detect [LabeledImageFilename] [OutputFilename]
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	===Tracking===		===Tracking===
	Tracker <args>		Tracker <args>

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Revision as of 14:15, 10 April 2009

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Contents 1 Executables 1.1 Segmentation 1.2 Detection 1.3 Tracking 1.4 Behaviors

Executables

Segmentation

See FARSIGHT Features

Detection

Detect [LabeledImageFilename] [OutputFilename]

Tracking

Tracker <args>

• Roussel R, Morton CA, Finger FP, Roysam B, “A Computational Model for C. elegans Locomotory Behavior: Application to Multi-Worm Tracking,” IEEE Transactions on Biomedical Engineering. 2007 Oct; 54(10):1786-97.
• Reid DB, "An algorithm for tracking multiple targets," IEEE Transactions on Automatic Control. 1979 Dec; 24(6):843-854.

Behaviors

• Pierce-Shimomura JT, Morse TM, Lockery SR, "The Fundamental Role of Pirouettes in Caenorhabditis elegans Chemotaxis," The Journal of Neuroscience. 1999 Nov; 19(21):9557–9569.