FARSIGHT Tutorials

Revision as of 13:43, 30 June 2009

The following tutorials are a work in progress and not complete

We use the Python language for writing scripts that tie together various segmentation and analysis modules for a given application.

• Tutorial on Python - the scripting language for FARSIGHT

Basic users can keep their image data and metadata in file folders. More advanced users would benefit from storing their data in an image database. We use the OMERO database developed by the open microscopy environment community.

• Documentation and tutorials on using the OMERO Image Database

Most users would prefer to just download and use pre-compiled versions of FARSIGHT. If you prefer to build it yourself, here is the process (takes a while).

• [How to Build FARSIGHT ]

The following pages describe procedures for Installing CMake, Python, CableSwig, and ITK on your computer

• Building Cmake, Python, CableSwig and ITK (for developers)

The following tutorial shows you how to install Python-wrapped ITK quickly.

• Just Installing Python-wraped ITK (for impatient users)

The following page shows you how to use Python-wrapped (or native Python) modules.

• Quick Start for using Python-wrapped ITK (30 minutes)

The following page shows you how to handle multi-channel image data:

• Multi-Component Images (30 minutes)

The following page shows you the steps in analyzing the 5-channel image to cytovascular map example on the home page:

• 5-Label Example - Image to Objects