The Worm Project

Revision as of 14:30, 24 April 2009 (view source) Tenickat (Talk | contribs) ← Older edit		Revision as of 14:54, 24 April 2009 (view source) Tenickat (Talk | contribs) (→Binarization) Newer edit →
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	===Binarization===		===Binarization===
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		+	WormBinarization [StringBeforeFilename] [MaskFilename] [StartFrame] [EndFrame][Levell]
	See  [[WormBinarization]]		See  [[WormBinarization]]

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Revision as of 14:54, 24 April 2009

The Worm module of FARSIGHT represents a robust multiple worm segmenting and tracking locomotion events in live worm time –lapse sequences in the presence of a pheromone. Worms are tracked according to their distance from the pheromone spots and intrinsic features are computed from the image data for each worm.

Contents 1 Executables 1.1 Binarization 1.2 Segmentation 1.3 Detection 1.4 Tracking 1.5 Behaviors

Executables

Binarization

 WormBinarization [StringBeforeFilename] [MaskFilename] [StartFrame] [EndFrame][Levell]

See WormBinarization

Segmentation

See FARSIGHT Features

Detection

Detect [LabeledImageFilename] [OutputFilename]

Tracking

See Worm Tracker

Behaviors

• Pierce-Shimomura JT, Morse TM, Lockery SR, "The Fundamental Role of Pirouettes in Caenorhabditis elegans Chemotaxis," The Journal of Neuroscience. 1999 Nov; 19(21):9557–9569.