FARSIGHT Tutorials
From FarsightWiki
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'''The following tutorials are a work in progress and not complete''' | '''The following tutorials are a work in progress and not complete''' | ||
| + | = Tutorials = | ||
| − | + | == Build == | |
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Most users would prefer to just download and use pre-compiled versions of FARSIGHT. If you prefer to build it yourself, here is the process (takes a while). | Most users would prefer to just download and use pre-compiled versions of FARSIGHT. If you prefer to build it yourself, here is the process (takes a while). | ||
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* [[FARSIGHT_HowToBuild | How to Build FARSIGHT ]] | * [[FARSIGHT_HowToBuild | How to Build FARSIGHT ]] | ||
| − | * [[ | + | To build Bio-Formats for use in FARSIGHT, see the following tutorial |
| + | |||
| + | * [[FARSIGHT Tutorials/Building Software/Bio-Formats | Building Bio-Formats (for developers)]] | ||
| + | * [[FARSIGHT_Tutorials/Building_Software/Bio-Formats/UsrTutorial| Building Bio-Formats (for users)]] | ||
| + | |||
| + | We show below how to install and build the programs under TissueNets system: | ||
| + | |||
| + | * [[TissueNets_HowToBuild|Building and Using TissueNets]] | ||
| + | |||
| + | == Use == | ||
| + | |||
| + | === Editors === | ||
How to use the editors to validate automated results | How to use the editors to validate automated results | ||
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* [[NucleusEditor|Nucleus Editor]] Segmentation and classification of Nuclei | * [[NucleusEditor|Nucleus Editor]] Segmentation and classification of Nuclei | ||
| − | + | === Image analysis workflows === | |
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The following page shows you the steps in analyzing the 5-channel image to cytovascular map example on the home page: | The following page shows you the steps in analyzing the 5-channel image to cytovascular map example on the home page: | ||
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* [[FARSIGHT Tutorials/5-Label | 5-Label Example - Image to Objects]] | * [[FARSIGHT Tutorials/5-Label | 5-Label Example - Image to Objects]] | ||
| + | * [[Farsight_Courses|Farsight Courses]] | ||
| − | + | == Extend and contribute == | |
| − | + | The Python language is used for writing scripts | |
| + | * [http://docs.python.org/tutorial/ Tutorial on Python ] | ||
| − | + | * [[Getting_Started_Coding | Coding Quick start]] | |
| − | + | The following page shows you the steps to implement model/selection/view architecture that we use in Farsight: | |
| − | + | * [[SampleEditor|Sample Editor]] | |
| − | * [[ | + | |
Revision as of 00:48, 18 January 2012
The following tutorials are a work in progress and not complete
Contents |
Tutorials
Build
Most users would prefer to just download and use pre-compiled versions of FARSIGHT. If you prefer to build it yourself, here is the process (takes a while).
To build Bio-Formats for use in FARSIGHT, see the following tutorial
We show below how to install and build the programs under TissueNets system:
Use
Editors
How to use the editors to validate automated results
- The Trace Editor Validation and analysis of automated Tracing Algorithms
- Nucleus Editor Segmentation and classification of Nuclei
Image analysis workflows
The following page shows you the steps in analyzing the 5-channel image to cytovascular map example on the home page:
Extend and contribute
The Python language is used for writing scripts
The following page shows you the steps to implement model/selection/view architecture that we use in Farsight:
