FARSIGHT Tutorials
The following tutorials are a work in progress and not complete
We use the Python language for writing scripts that tie together various segmentation and analysis modules for a given application.
Basic users can keep their image data and metadata in file folders. More advanced users would benefit from storing their data in an image database. We use the OMERO database developed by the open microscopy environment community.
Most users would prefer to just download and use pre-compiled versions of FARSIGHT. If you prefer to build it yourself, here is the process (takes a while).
The following pages describe procedures for Installing CMake, Python, CableSwig, and ITK on your computer
To build Bio-Formats for use in FARSIGHT, see the following tutorial
The following tutorial shows you how to install Python-wrapped ITK quickly.
The following page shows you how to use Python-wrapped (or native Python) modules.
The following page shows you how to handle multi-channel image data:
You can learn about the Bio-Formats command line tools from the following tutorial:
The following page shows you the steps in analyzing the 5-channel image to cytovascular map example on the home page:
The following page shows you the steps to implement model/selection/view architecture that we use in Nucleus Editor program:
