The following tutorials are a work in progress and not complete

Contents 1 Tutorials 1.1 Build 1.2 Use 1.2.1 Editors 1.2.2 Image analysis workflows 1.3 Extend and contribute

Tutorials

Build

Most users would prefer to just download and use pre-compiled versions of FARSIGHT. If you prefer to build it yourself, here is the process (takes a while).

• How to Build FARSIGHT

To build Bio-Formats for use in FARSIGHT, see the following tutorial

• Building Bio-Formats (for developers)
• Building Bio-Formats (for users)

We show below how to install and build the programs under TissueNets system:

• Building and Using TissueNets

Use

Editors

How to use the editors to validate automated results

• The Trace Editor Validation and analysis of automated Tracing Algorithms
• Nucleus Editor Segmentation and classification of Nuclei

Image analysis workflows

The following page shows you the steps in analyzing the 5-channel image to cytovascular map example on the home page:

• 5-Label Example - Image to Objects

• Farsight Courses

• Microglia Tracing Tutorial

Extend and contribute

The Python language is used for writing scripts

• Tutorial on Python

• Coding Quick start

The following page shows you the steps to implement model/selection/view architecture that we use in Farsight:

• Sample Editor