Tracing
From FarsightWiki
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| + | Neurons and Vessels are examples of tubular structures that can be traced using our automated algorithms. Tracing the structures provides the skeleton, or backbone, that represents the tree structure. The structure surface can alternatively be [[Vessel_Laminae_Segmentation| Segmented]] for other forms of analysis. | ||
We have the following tracing algorithms: | We have the following tracing algorithms: | ||
| − | + | #[[MDL_Neuron_Modeling|MDL]] | |
| − | + | #[[SuperEllipseTrace3D|Superelipsoid]] | |
| − | + | #RPI Trace 3D | |
| − | The | + | #[[Dendritic_Spine_Segmentation|Spine Ring Detector]] |
| + | |||
| + | The outputs are stored in a [[Common_Tracing_Output_Format |trace file]] that can be validated and edited with the [[Trace_Editor|Trace Editor]] | ||
Revision as of 23:11, 14 October 2009
Neurons and Vessels are examples of tubular structures that can be traced using our automated algorithms. Tracing the structures provides the skeleton, or backbone, that represents the tree structure. The structure surface can alternatively be Segmented for other forms of analysis. We have the following tracing algorithms:
- MDL
- Superelipsoid
- RPI Trace 3D
- Spine Ring Detector
The outputs are stored in a trace file that can be validated and edited with the Trace Editor
