Tracing
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Neurons and Vessels are examples of tubular structures that can be traced using our automated algorithms. Tracing the structures provides the skeleton, or backbone, that represents the tree structure. The structure surface can alternatively be [[Vessel_Laminae_Segmentation| Segmented]] for other forms of analysis. | Neurons and Vessels are examples of tubular structures that can be traced using our automated algorithms. Tracing the structures provides the skeleton, or backbone, that represents the tree structure. The structure surface can alternatively be [[Vessel_Laminae_Segmentation| Segmented]] for other forms of analysis. | ||
We have the following tracing algorithms: | We have the following tracing algorithms: | ||
| − | #[[MDL_Neuron_Modeling|MDL]] | + | #[[MDL_Neuron_Modeling|MDL]] - for neuron tracing - has been replaced with newer tracers |
| − | #[[SuperEllipseTrace3D| | + | #[[Microglia_Tracer|Microglia tracer]] |
| − | # | + | #[[SuperEllipseTrace3D|Superellipsoid]] - trace hollow vessels |
| + | #[[RPI_Trace_3D]] | ||
#[[Dendritic_Spine_Segmentation|Spine Ring Detector]] | #[[Dendritic_Spine_Segmentation|Spine Ring Detector]] | ||
The outputs are stored in a [[Common_Tracing_Output_Format |trace file]] that can be validated and edited with the [[Trace_Editor|Trace Editor]] | The outputs are stored in a [[Common_Tracing_Output_Format |trace file]] that can be validated and edited with the [[Trace_Editor|Trace Editor]] | ||
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| + | Information on | ||
| + | *[[DendriticSpineFeatures |spine features]]. | ||
| + | *[[Trace_Editor/Features| Trace Editor Features]] | ||
| + | *[[L_Measure_functions| L Measure Functions]] | ||
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| + | [[Frequently Asked Questions]] | ||
Latest revision as of 16:25, 29 June 2012
Neurons and Vessels are examples of tubular structures that can be traced using our automated algorithms. Tracing the structures provides the skeleton, or backbone, that represents the tree structure. The structure surface can alternatively be Segmented for other forms of analysis. We have the following tracing algorithms:
- MDL - for neuron tracing - has been replaced with newer tracers
- Microglia tracer
- Superellipsoid - trace hollow vessels
- RPI_Trace_3D
- Spine Ring Detector
The outputs are stored in a trace file that can be validated and edited with the Trace Editor
Information on
